Provide the names of the conditions (phenotypes) analyzed and written in the xlsx sheets of the input omics files (DO NOT USE '_' for names!). Format example: Cool,Hot3,mkey

Provide the analyzed conditions (phenotypes) contrasts. They should be the names of the xlsx sheets. Format example: CoolvsHot3,mkeyvsCool,Hot3vsCool. Use 'vs' to write the contrasts

Upload an archive containing at least one omics file. Each omics file needs to be an Excel table with the sheets containing a 'UniProt_ChEBI' column with Uniprot or ChEBI Ids in accordance with the documentation

Select the NetWalk framework restart probablity for weighted networks. This value will be used only if the input tables have a node weight column named 'Weight'

Provide the analyzed conditions (phenotypes) contrasts. They should be the names of the xlsx sheets. Format example: CoolvsHot3,mkeyvsCool,Hot3vsCool. Use 'vs' to write the contrasts

Provide the BioMart dataset used for the mapping of the protein Ids. For other organisms than the pre-loaded ones, provide the pre-formated interaction table! Check the documentation to see the full list of pre-loaded organisms

Provide the name of the splicing file in the archive. If you use splicing data, the contrast must be symmetric! Leave default for no DTU data

Choose if you would like to use a pre-compiled interaction file, formated in accordance with the instructions. A default interaction file is available. For other organisms than the pre-loaded ones, upload a pre-compiled interaction file!

Provide the names of the databases against which the enrichment will be performed. Example: Reactome, Wikipathways

Provide the BioMart dataset used for the mapping of the protein Ids. For other organisms than the pre-loaded ones, provide the pre-formated interaction table! The available biomartID is only for humans. Alternatives: mmusculus_gene_ensembl, rnorvegicus_gene_ensembl, btaurus_gene_ensembl, dmelanogaster_gene_ensembl, drerio_gene_ensembl. See the documentation for the full list

Choose if you would like to use a pre-compiled interaction file, formated in accordance with the instructions. A default interaction file is available. For other organisms than the pre-loaded ones, upload a pre-compiled interaction file!

Provide the MONET analysis method options

Provide a temporary bin server. Leave empty for default

Provide the monet executable path. Developer mode

Provide the MONET background file. Leave empty for default

Provide the CPDB database file. Leave empty for default

Provide the transcription factors dataset file. Leave empty for default

Provide the network centralities file. Leave empty for default

Provide the Kinome dataset file. Leave empty for default

Provide the file ending specific for a type of analysis. Default to 'Total'. Leave empty for default